1. Saccharomyces Genome Database Stanford Genomic Resources It is maintained by the saccharomyces Genome Database within the Department ofGenetics. Database Resources. SGD, saccharomyces Genome Database. http://genome-www.stanford.edu/Saccharomyces/

Quick Search: Site Map Help Full Search Home ... and more SGD TM is a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. New and Noteworthy New Links added to SGD Locus Pages The following new links to databases describing different phenotypes of deletion strains have been added under the Functional Analysis pull-down menu on the locus page: PROPHECY : provides quantitative information regarding growth rate, growth efficiency, and adaptation time for haploid deletion strains SCMD : a collection of micrographs of budding yeast mutants Thanks to Luciano Fernandez-Ricaud for setting up the links to PROPHECY and Shinichi Morishita and Yoshikazu Ohya for setting up the links to SCMD. (Posted May 12, 2004) Literature curation news New papers added to SGD this week. View Genome-wide Analysis papers in SGD. Do a literature search Table of Gene Summary Paragraphs (new ones highlighted yellow). Table of Community Annotations New BLASTP Best Hits resource available SGD has a new resource, "Model Organism BLASTP Best Hits", that displays the results of

2. Saccharomyces Genome Database SGD TM is a scientific database of the molecular biology and genetics of the yeastsaccharomyces cerevisiae, which is commonly known as baker s or budding yeast http://www.yeastgenome.org/

Quick Search: Site Map Help Full Search Home ... and more SGD TM is a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. New and Noteworthy New Links added to SGD Locus Pages The following new links to databases describing different phenotypes of deletion strains have been added under the Functional Analysis pull-down menu on the locus page: PROPHECY : provides quantitative information regarding growth rate, growth efficiency, and adaptation time for haploid deletion strains SCMD : a collection of micrographs of budding yeast mutants Thanks to Luciano Fernandez-Ricaud for setting up the links to PROPHECY and Shinichi Morishita and Yoshikazu Ohya for setting up the links to SCMD. (Posted May 12, 2004) Literature curation news New papers added to SGD this week. View Genome-wide Analysis papers in SGD. Do a literature search Table of Gene Summary Paragraphs (new ones highlighted yellow). Table of Community Annotations New BLASTP Best Hits resource available SGD has a new resource, "Model Organism BLASTP Best Hits", that displays the results of

3. SCPD The Promoter Database of saccharomyces cerevisiae. Genes Explore the promoter regions of ~6000 genes and ORFs in yeast http://cgsigma.cshl.org/jian

4. ORNL Genome Analysis Pipeline - Yeast (Saccharomyces Cerevisiae) ORNL Genome Analysis Pipeline Yeast (saccharomyces cerevisiae) Select organism saccharomyces cerevisiae. Select all services. Generation Genes. Post-processing on predicted genes Blastp. Database Swissprot http://compbio.ornl.gov/GP3/yeast.shtml

ORNL Genome Analysis Pipeline - Yeast (Saccharomyces cerevisiae) Select organism: Saccharomyces cerevisiae Select all services Generation Genes Post-processing on predicted genes: Blastp Database: Swissprot Genbank nr E-value: Pfam Glimmer Genes Post-processing on predicted genes: Blastp Database: Swissprot Genbank nr E-value: Pfam CpG GrailEXP Repeats tRNA BLASTN Database nt dbSTS dbest-human dbest-mouse dbest-others BAC-end - human BAC-end - mouse E. coli Repbase Microbial Nonredundant Repeats Options: Expect Word Size DNA Sequence: Site Map Feedback Life Sciences Division ORNL ... Webmaster

5. Saccharomyces Cerevisiae Microscopic image of bread yeast. http://www.dipbot.unict.it/sistematica/Saccharom.html

Eumycota Ascomycetes Saccharomycetales Saccharomycetaceae Saccharomyces cerevisiae Cellule di lievito in gemmazione. Torna alla pagina iniziale Indice Funghi Indice Ascomycetes

6. Stanford Genomic Resources It is maintained by the saccharomyces Genome Database within the Department of Genetics 2003) Genomewide analysis of mRNA lengths in saccharomyces cerevisiae. Genome Biol 5(1)R2 http://genome-www.stanford.edu/

Stanford Genomic Resources This page provides links to various systematic analysis projects, resources, laboratories, and departments at Stanford University . It is maintained by the Saccharomyces Genome Database within the Department of Genetics Database Resources Saccharomyces Genome Database Stanford Microarray Database PharmGKB ... Genome Database Stanford Genome Centers Stanford Human Genome Center (SHGC) Stanford Genome Technology Center Stanford Genomic Projects Stanford Functional Genomics Facility (SFGF) Gene Ontology (GO) Consortium Stanford Genomics Breast Cancer Consortium Portal Stanford Tissue Microarray Portal ... Genome Deletion Project Published Datasets (Stanford) S.cerevisiae C. elegans Human All organisms Software Resources Microarray Software Genomic Research Departments Genetics Biological Sciences Biochemistry Developmental Biology Mirrored Resources GeneCards v2.28 VectorDB WebMiner GermOnline New Items Jones T, et al. (2004) The diploid genome sequence of Candida albicans. Proc Natl Acad Sci U S A 101(19):7329-34 Chang HY, et al. (2004) Gene Expression Signature of Fibroblast Serum Response Predicts Human Cancer Progression: Similarities between Tumors and Wounds. PLoS Biol 2(2):E7 Bergmann S, et al. (2003) Similarities and Differences in Genome-Wide Expression Data of Six Organisms. PLoS Biol 2(1):E9 Lapointe J, et al. (2004) Gene expression profiling identifies clinically relevant subtypes of prostate cancer. Proc Natl Acad Sci U S A 101(3):811-6 ... Enter here for previous Web Supplements Organism-limited sets are also available from the

7. CYGD MIPS saccharomyces cerevisiae group. Systematic identification of proteincomplexes in saccharomyces cerevisiae by mass spectrometry. Nature. http://mips.gsf.de/proj/yeast/CYGD/db/

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8. Jean Beggs Lab Home Page Research focused on premRNA splicing in the yeast saccharomyces cerevisiae, in particular the proteinprotein and protein-RNA interactions within the spliceosome at the University of Edinburgh, UK. http://www.ed.ac.uk/~jeanb/

We are studying pre-mRNA splicing in the yeast Saccharomyces cerevisiae . Pre-mRNA splicing takes place in a very large RNA-protein complex, the spliceosome, within which there are subparticles, the small ribonucleoprotein particles (snRNPs: U1, U2,U4, U5 and U6), each composed of a small nuclear RNA (snRNA) and a set of proteins. During spliceosome assembly and during the course of the splicing reactions many dynamic RNA-RNA interactions occur and are apparently regulated by proteins. Proteins also regulate the specificity, accuracy and efficiency of the splicing process. We are investigating molecular interactions in the spliceosome and identifying novel splicing factors, using both biochemical and genetic approaches, including in vitro splicing assays, UV crosslinking, two-hybrid screens and, more recently, microarray analysis. For more information on pre-mRNA splicing, try The Yeast Nucleus by P. Fantes and J. Beggs, published by Oxford Univerity Press. Recent Publications Projects Studied Choose A Project Lsm Proteins Microarrays An Introduction to RNA Splicing This site is a member of the RNA webring Previous 5 Sites Previous Next ... List Sites This page was last updated on 26 May 2004 by Florance Kennedy.

9. THE SACCHAROMYCES CEREVISIAE GLOSSARY saccharomyces cerevisiae Taxonomic classification Eukaryota; Fungi; Ascomycota;Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae http://mips.gsf.de/proj/yeast/info/glossary.html

Yeast - Glossary Amino Acids The building blocks of proteins . They all have the same carbon backbone structure but differ from one another according to the individual side chain. Only 20 of the naturally occurring amino acids are commonly found in proteins. Ascospore (Spore) A specialized haploid cell produced during meiosis Ascus A sac-like structure containing four spores in S. cerevisiae Plural: asci. Autonomous Replication Sequence (ARS) A DNA consensus sequence which usually functions as an origin of DNA replication . There are various consensus sequences. We used the conservative 5'-(A/T)TTTAT(A/G)TTT(A/T)-3' consensus for our analysis (Stinchcomb et al. 1981; Broach et al. 1983). Bases The variable part of DNA . The nitrogenous bases of DNA are divided into two groups: purines [adenine (A) and guanine (G)] and pyrimidines [thymine (T) and cytosine (C)]. In RNA , thymine is replaced by uracil (U). Modified and unusual bases, such as pseudouridine, are found in tRNA molecules. Base pair (bp) Two bases, linked by noncovalent forces, that pair in double-stranded

10. LIFE - Laboratorio De Investigacao De Fatores De Estresse Work on the response of saccharomyces cerevisiae to stress conditions, in the presence of reactive oxygen, exposure to heavy metals and dehydration. Includes publications, collaborations, links, and contacts in Rio de Janeiro, Brazil. http://www.life-lab.net/

Linhas de Pesquisa O Grupo Links Contato ... English version Produzido por Web Target

11. YeastDeletionWebPages Happy New Year and welcome to the saccharomyces Genome Deletion Project web page The saccharomyces Genome Project has revealed the presence of more than 6000 open reading frames http://sequence-www.stanford.edu/group/yeast_deletion_project/deletions3.html

Deletion Page Home Databases and Datasets FAQs Deletion Strains Available ... Yeast Deletion Database (consortium members only) Dear Colleagues, Happy New Year and welcome to the Saccharomyces Genome Deletion Project web page. The purpose of this page is to communicate protocols, methods and information about the project. Please let us know what information you would like to see included or suggest useful links. Project Overview The Saccharomyces Genome Project has revealed the presence of more than 6000 open reading frames (ORFs) in the S. cerevisiae genome. Approximately one third of these ORFs currently have no known function four years after their discovery. The goal of the Saccharomyces Genome Deletion Project is to generate as complete a set as possible of yeast deletion strains with the overall goal of assigning function to the ORFs through phenotypic analysis of the mutants. The method used was a PCR-based gene deletion strategy to generate a start- to stop- codon deletion of each of the ORFs in the yeast genome. As part of the deletion process, each gene disruption was replaced with a KanMX module and uniquely tagged with one or two 20mer sequence(s) . The presence of the tags can be detected via hybridization to a high-density oligonucleotide array, enabling growth phenotypes of individual strains to be analyzed in parallel .

12. The World-Wide Web Virtual Library: Yeast Cytobiology, biochemistry and genetics of the saccharomyces cerevisiae and Schizosaccharomyces pombe, with links to resources and databases. Section of the Virtual Library maintained at Department of Genetics, School of Medicine, Stanford University, California. http://www.yeastgenome.org/VL-yeast.html

Yeast ( Budding Fission , and Candida World-Wide Web Virtual Library Biosciences This section of the Virtual Library describes the yeast model organisms: Saccharomyces cerevisiae (budding, bakers', and sometimes brewers'), Schizosaccharomyces pombe (fission), and Candida albicans Contents of this page Yeast information for the non-specialist Saccharomyces cerevisiae information Schizosaccharomyces pombe ... Biology Related Career Resources Yeast information for the non-specialist Generally speaking: What are yeasts Here are some pictures of yeast General information about yeast and beer brewing The Art of Brewing , courtesy of Miller Brewing Company Information about yeast and bread baking, from Fleischmann's and Red Star Yeast companies. Information about the yeast-based foods Marmite and Vegemite Saccharomyces cerevisiae information Resources for educators General S. cerevisiae information ... Functional genomics resources Resources for educators Genetics Education Network. Tom Manney's (Kansas State University) yeast experiments for undergrads and high school students. A well-done and informative web site for yeast in the classroom. Research Link 2000.

13. Saccharomyces Genome Sequencing elegans Genome. C. briggsae Genome. Human Genome. Mouse Genome. Nematode.net. EST Projects. Bacterial Genomes. Histoplasma Capsulatum. Chimpanzee Genome. Chicken Genome. Home. Navigation. saccharomyces Genomes. Overview Assembly Information. BLAST. saccharomyces Genome Sequencing at the GSC 2 to 4fold shotgun coverage) of five saccharomyces species (click here for a phlyogenetic tree of these http://genome.wustl.edu/projects/yeast

Information C. elegans Genome C. briggsae Genome Human Genome ... Home Navigation Saccharomyces Genomes Overview Phylogenetic Tree Assembly Information BLAST Saccharomyces Genome Sequencing at the GSC With the goal of identifying functional non-coding DNA sequences in the yeast genome, we have partially determined the genome sequences (2 to 4-fold shotgun coverage) of five Saccharomyces species (click here for a phlyogenetic tree of these species): S. mikatae S. kudriavzevii S. bayanus S. castellii S. kluyveri Finding functional features in Saccharomyces Genomes by phylogenetic footprinting The first three species listed above are relatively closely related to S. cerevisiae, and the alignments of their sequences to S. cerevisiae sequence are likely to be most useful for identifying conserved non-coding sequences. The last two species listed above are more distantly related to S. cerevisiae, so alignments of S. cerevisiae protein sequences to their orthologs in these species are likely to be more useful for identifying possible functional domains in protein sequence (see Cliften et al.

14. Yeast Articles on all aspects of saccharomyces and other yeast genera. http://www.interscience.wiley.com/jpages/0749-503X/

15. Saccharomyces O Ciclo celular. Em S. cerevisiae, como em mamíferos, a passagem da fase G1 para a fase S do ciclo celular é regulada por fatores de transcrição que ativam a expressão de genes que codificam ciclinas. Visite o Banco de Dados de saccharomyces cerevisiae. As leveduras são fungos unicelulares que leveduras podem dividirse ou por brotamento ( saccharomyces cerevisiae) ou por fissão http://www.biologianaweb.com/Livro1/C6/cerevisiae.html

Saccharomyces cerevisiae M. Christina M. Bonato biologia@pop.ehost.com S. cerevisiae Ciclo celular Tipos celulares ... Biologia na web Visite o Banco de Dados de Saccharomyces cerevisiae brotamento Saccharomyces cerevisiae ) ou por Schizossacharomyces pombe O Ciclo celular Em S. cerevisiae para a fase S ciclinas e START (Figura 6.1). Figura 6.1. Ciclo celular em S. cerevisiae S. cerevisiae Tipos celulares A levedura S. cerevisiae cruzamento n n ) ou da tipo de acasalamento (" MAT ing type") da linhagem. Somente células haplóides com tipos de acasalamento (sexo) diferentes podem fundir-se. Os tipos de acasalamento são a ou a a a S. cerevisiae a a e a a

16. Saccharomyces Cerevisiae saccharomyces cerevisiae. Beer is proof that God loves us and wants usto be happy. Benjamin Frankin. The secret? saccharomyces cerevisiae http://www-micro.msb.le.ac.uk/video/Scerevisiae.html

Microbiology Video Library : Saccharomyces cerevisiae Search Saccharomyces cerevisiae Beer is proof that God loves us and wants us to be happy. Benjamin Frankin Sometime between 10,000 and 15,000 years ago, a Mesopotamian farmer discovered that the water some grain had been soaking in had developed a funny taste. He woke the next day having made two important discoveries: Beer Hangovers The first written records of brewing come from Sumeria about 6,000 years ago. But all that drinking was making people hungry, so in Egypt around 5,000 years ago, they starting making bread (or at least, wrote down the recipe). Before that, bread was tough, dry stuff that tended to break your teeth and made your jaw ache. Bread made with yeast was wonderful, light, tasty stuff. The secret? Saccharomyces cerevisiae: Saccharomyces cerevisiae (Yeast) (1.6Mb QuickTime web quality sample: download FREE QuickTime Player You can get a longer, better quality version of this video on the Microbiology Video Library CD Broadcast quality (520 line) digital video: 4 minutes duration, no soundtrack. Supplied on PAL format miniDV tape plus accompanying notes. If you are interested in obtaining this video or in specific video commissions

17. Arlen Johnson Lab: Home Page A member of the Institute for Cellular and Molecular Biology. Research concerns mRNA degradation as a mechanism of translational control in the yeast saccharomyces cerevisiae. http://www.utexas.edu/research/rnadecay/

Lab Interests From left to right: Ivy Hung, Arlen Johnson, John Hedges, Alice Wang, Matt West Former lab members Positions Available This page last updated: Saturday, November 23, 2002 Webmaster: Justin Brown contact us

18. Lycaeum > Leda > Saccharomyces Hosted Sites. Books. Contact. About. FedWatch. FedWatch Referrers. Sponsor. saccharomyces. Rank Genus. Children saccharomyces cerevisiae ( Brewer's yeast) Created 3/15/2000 223732. Modified 3/15/2000 223732. Leda version 1.4.3. Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae saccharomyces. What's New http://leda.lycaeum.org/?ID=84

19. Saccharomyces Cerevisiae Two images of baker s yeast, saccharomyces cerevisiae, by scanning electronmicroscopy. saccharomyces cerevisiae. saccharomyces cerevisiae yeast. http://anka.livstek.lth.se:2080/yeast.htm

Saccharomyces cerevisiae Links to yeast (budding, fission, and Candida) provide a great variety of information. The question: "What are yeasts?" is answered here The yeast cells featured were obtained by culturing commercial baker's yeast. Other foodborne microorganisms may be accessed from these links and from another site. Wine making Saccharomyces bayanus resembles S. cerevisiae but its cells are somewhat more globular; for this reason, S. bayanus is also called S. globosus the author. Commercial interest in micrographs should be directed to CMSP PR PTI /BPS or other stock photo companies Home Updated: November 26, 2001.

20. Yeast Resource Center Serves to faciliate the identification and characterization of protein complexes in the yeast saccharomyces cerevisiae. Features overview of techniques and center publications. http://depts.washington.edu/~yeastrc/

The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate the identification and characterization of protein complexes in the yeast Saccharomyces cerevisiae. We provide expertise and access to four advanced technologies: mass spectrometry, two-hybrid arrays, deconvolution fluorescence microscopy and protein structure prediction. Through collaborations with YRC personnel these critical, but costly, technologies are made available to a large community of researchers throughout the country. The investigators participating in the YRC include Dr. John Yates and Dr. Ruedi Aebersold for mass spectrometry, Dr. Stan Fields for two-hybrid analysis, Dr. Trisha Davis and Dr. Eric Muller for fluorescence microscopy, and Dr. David Baker for protein structure prediction. These services are provided to further the goal of a complete understanding of the chemical interactions required for the maintenance and faithful reproduction of a living cell. The observation that the fundamental biological processes of yeast are conserved among all eukaryotes ensures that this knowledge will shape and advance our understanding of living systems. A list of publications generated in collaborations with the YRC can be found here . The publications highlight the impact of the

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