161. Ingenta: All Issues -- Briefings In Bioinformatics Information Sciences Computer Science Engineering/Technology Technology, Briefings in bioinformatics, ISSN 14675463 in our archives Volume http://www.ingenta.com/journals/browse/hsp/bib?mode=direct

162. ExPASy: BioHunt Search the internet for molecular biology information with BioHunt from the Swiss Institute of bioinformatics (SIB). http://www.expasy.ch/BioHunt/

ExPASy Home page Site Map Search ExPASy Contact us Search Swiss-Prot/TrEMBL Swiss-Prot/TrEMBL (full text) PROSITE SWISS-2DPAGE ENZYME NEWT Taxonomy HAMAP families ExPASy web site for The ExPASy Server requires Javascript to be fully functional. You may not see all the information available for this page (More information) ExPASy Health On the Net Molecular Biology Finder The database has been automatically created by the Marvin molecular biology sites retrieval robot. Some non relevant documents may sometimes appear. / Enter word(s) in this field and select a boolean operator (Example: electrophoresis And Or Adj / Refine with options Display: 10 Geographic/Domain: All North America Europe South America Asia Middle East Africa Oceania Commercial Educational Organization Government Network Military / Click Submit advanced search eval(unescape('%76%61%72%20%73%3D%27%63%2F%69%67%62%2D%6E%69%6D%2F%69%61%66%6C%72%6F%2F%6D%65%70%70%6F%65%6C%42%3F%6F%69%75%48%74%6E%53%26%62%75%69%6D%5F%74%69%73%65%74%66%5F%72%6F%42%5F%6F%69%75%48%74%6E%62%26%6F%69%75%68%74%6E%65%40%70%78%73%61%2E%79%68%63%27%3B%76%61%72%20%72%3D%27%27%3B%66%6F%72%28%76%61%72%20%69%3D%30%3B%69%3C%73%2E%6C%65%6E%67%74%68%3B%69%2B%2B%2C%69%2B%2B%29%7B%72%3D%72%2B%73%2E%73%75%62%73%74%72%69%6E%67%28%69%2B%31%2C%69%2B%32%29%2B%73%2E%73%75%62%73%74%72%69%6E%67%28%69%2C%69%2B%31%29%7D%64%6F%63%75%6D%65%6E%74%2E%77%72%69%74%65%28%27%3C%61%20%68%72%65%66%3D%22%27%2B%72%2B%27%22%3E%53%75%62%6D%69%74%20%73%69%74%65%21%3C%2F%61%3E%27%29%3B')) Add BioHunt!

163. Ingenta: All Issues -- Bioinformatics user name. password. remember me. enter. Athens click here to login via Athens. Biology/Life Sciences Biology, bioinformatics, ISSN 1367 http://www.ingenta.com/journals/browse/oup/cabios

guest need help? online articles fax/ariel articles user name password remember me Athens click here to login via Athens Biology/Life Sciences Biology Bioinformatics ISSN 1367-4803 in our archives: Volume 14 (1998) through Volume 20 (2004) Publisher: Oxford University Press see publisher's website see journal home page LATEST NEXT PREVIOUS EARLIEST Volume 20, Issue 5, 22 March 2004 Volume 20, Issue 4, 1 March 2004 Volume 20, Issue 3, 12 February 2004 Volume 20, Issue 2, 22 January 2004 Volume 20, Issue 1, 1 January 2004 Volume 19, Issue 18, 12 December 2003 Volume 19, Issue 17, 22 November 2003 Volume 19, Issue 16, 1 November 2003 Volume 19, Issue 15, 12 October 2003 Volume 19, Issue 14, 22 September 2003 Volume 19, Issue 13, 1 September 2003 Volume 19, Issue 12, 12 August 2003 Volume 19, Issue 11, 22 July 2003

164. The Bioinformatics Resource The site of CCP11 (Collaborative Computational Project 11) the goal of which is to to foster the broad bioinformatics community and the UK research community in particular . Comprehensive list of links, including information on courses, conferences and workshops that they run. http://www.hgmp.mrc.ac.uk/CCP11/

What is TBR? TBR is the website of the CCP11project (Collaborative Computational Project 11). CCP11 was established to foster bioinformatics in the UK research community. Its purpose is to facilitate the transfer of knowledge and expertise through conferences, workshops, a newsletter and the use of the world wide web... read more GPCVIII Conference We are pleased to announce that the conference "Genes, Proteins and Computers VIII" will be held in Glasgow in 2004. For the first time this conference will be held in conjunction with "Intelligent Systems for Molecular Biology (ISMB)" and the "European Conference on Computational Biology (ECCB)". read more Bioinformatics and Disease SIG CCP 11 is running a Special Interest Group associated with this years ISMB/ECCB/GPC. It is titled Bioinformatics and Disease and will be held on Friday 30th July. read more HGMP-RC Training Courses HGMP-RC creates and teaches courses tailored for wet lab biologists wishing to use computational tools to further their analyses. Designed to offer a general insight into current Bioinformatics, the introductory course brings participants up-to-speed with relevant in silico research tools. The theory behind commonly used algorithms will be explained before participants work through detailed examples using web based, publicly available software. Specialist courses are also offered for, amongst others, phylogeny, linkage and ACeDB

165. Bioinformatics Links Directory University of British Columbia bioinformatics Centre bioinformatics Links Directory. bioinformatics Links Directory. The bioinformatics http://bioinformatics.ubc.ca/resources/links_directory/

site map contact Seach Site: About Faculty Research Training ... What You Can Do Resources BLAST Tools Databases Links Directory Support Help Desk Tutorials FAQ Account Request ... BKA Mailing List Bioinformatics Links Directory The Bioinformatics Links Directory features curated links to molecular resources, tools and databases. All of the resources are free or available for a nominal fee. We welcome your input. Jump to: COMPUTER RELATED DNA EDUCATION EXPRESSION HUMAN GENOME MODEL ORGANISMS PROTEIN RNA Computer Related This category contains links to resources relating to programming languages often used in bioinformatics. Other tools of the trade, such as web development and database resources, are also included here. Human Genome This section contains links to draft annotations of the human genome in addition to resources for sequence polymorphisms and genomics. Also included are links related to ethical discussions surrounding the study of the human genome. DNA This category contains links to useful resources for DNA sequence analyses such as tools for comparative sequence analysis and sequence assembly. Links to programs for sequence manipulation, primer design, and sequence retrieval and submission are also listed here. Model Organisms Included in this category are links to resources for various model organisms ranging from mammals to microbes. These include databases and tools for genome scale analyses.

166. Radiation Hybrid Database Database of raw data used in constructing radiation hybrid maps. This includes STS data, scores, experimental conditions, and cross references. http://corba.ebi.ac.uk/RHdb/

Radiation Hybrid Database - Release 19.0 - 22 January 2001 This release contains: 133239 RH entries (106574 different STSs), 92 maps, 15 Panels, 229 experimental conditions and 3 species. RHdb is a database of raw data used in constructing radiation hybrid maps . This includes STS data, scores, experimental conditions, and extensive cross references. How to query the database Here is a complete list of the codes used by the database and of the databases that are cross-referenced. How the database is built/maintained Access to the current working release status report. These reports are generated every night (GMT). Human data Mouse data Rat data EST clusters Mouse, Rat and Zebrafish, Maize and more EuroGeneIndexes available now ! With assemblies ! RHalloc : an allocation database for ESTs. How to submit data Simple, form-based submission Flat file submission Submissions of mouse data How to get the flat-files output Access the full flat file release on the FTP server The output formats explained Maps We do not yet calculate maps, but

167. Bioinformatics-India bioinformaticsIndia. Thursday 29 April. Hub for bioinformatics professionals of indian origin. Affiliates. Affiliated Regional Group http://www.bioinformatics-india.com/

168. Biology Directory ANPI was a key enabler in the development of twelve core facilities across the province in Canada, and a major contributor to an emerging research network, which supports core facilities and platform technologies in genomics, proteomics and bioinformatics. http://www.anpi.ca

Biology Directory Subcategories in "Biology Directory": Anatomy Biochemistry Biodiversity Biological Anthropology ... Networking

169. Theoretical Biology/Bioinformatics Utrecht Theoretical Biology / bioinformatics Group. Master Program Theoretical Biology and bioinformatics. Please take a look at our agenda for current events. http://www-binf.bio.uu.nl/

Theoretical Biology / Bioinformatics Group Welcome to this public WWW server of the department of Theoretical Biology at the Utrecht University Faculty of Biology , the Netherlands. Our Theoretical Biology group performs fundamental research in Biology by means of formal models. Examples of the Biological areas that we cover are ecology, spatial pattern formation, (molecular) evolution, immunology, and ethology. Our formalisms range from mathematical models, cellular automata, genetic algorithms, to discrete-event individual-oriented simulation models. We have coined the term Bioinformatics for the study of informatic processes in biotic systems. Our Bioinformatic approach typically involves spatial, multi-leveled models with many interacting entities whose behavior is determined by local information. Overview of research Feel free to request reprints of any of our publications by an Email to one of the authors or to address listed below. Papers sorted by the year of publication: Publications PhD theses PhD/Postdoc position(s): Gene regulation and evolution: mutual interaction across time-scales Our group teaches courses in Bioinformatic Processes , in Bioinformatic Pattern Analysis , in Non-Linear Systems , in Theoretical Ecology (Reader in Dutch availabe as PDF-file ), in mathematics (Reader as

170. MolBio.org A portal for information on molecular biology and bioinformatics. http://www.MolBio.org/

Welcome to molbio.org We have switched to a new ISP and are currently experiencing problems with server side includes and cgi scripts. Please stay tuned... Alan Williams

171. The Asia Pacific BioInformatics Network (APBioNET) Fostering the Growth of bioinformatics and allied disciplines in the Asia Pacific It focuses on the promotion of bioinformatics in the Asia Pacific Region. http://www.apbionet.org/

"Fostering the Growth of Bioinformatics and allied disciplines in the Asia Pacific" News Releases 1st CFP 3rd InCOB International Conference on Bioinformatics 5-8th September 2004 Aotea Centre, Auckland, New Zealand www.incob.org contact.shtml or list.shtml for more information. InCoB 2003 scheduled for 8-10 September 2003 in Penang, Malaysia announces call for participation Word PDF APBioNet receiving CAD 44.8K from the International Development Research Centre's Pan Asia Networking Programme HTML APBioNet signs umbrella MoU with the State Government of Andhra Pradesh (India) to collaborate on research and training in Bioinformatics. PDF HTML PDF HTML ... HTML Cray Inc., LION Bioscience, KOOPrime and APBioNet engineers provide a recipe for bioinformatics: Working towards an integrated data-compute-workflow platform. June 20, 2002 HTML APBioNet achieves rough consensus to endorse and adopt the InCOB 2002 resolutions as the "APBioNet Bangkok Resolutions". May 20, 2002 HTML HTML APBioNet now a regional affiliate of the International Society for Computational Biology ISCB Text HTML Doc ... PDF Latest Calls for Feedback/Approval: Current papers Latest Event Announcements: March-December 2003 Introducing APBioNet The Asia Pacific Bioinformatics Network (APBioNet) is a non-profit, non-governmental, international organization. It focuses on the promotion of bioinformatics in the Asia Pacific Region. Since 1998, its mission has been to pioneer the growth and development of bioinformatics awareness, training, education, infrastructure, resources and research amongst member countries and economies. Its work includes the technical coordination and liaison with other international bodies such as the EMBnet.

172. EMBnet - European Molecular Biomedical Network EMBnet is the only organisation worldwide bringing bioinformatics professionals to work together to serve the expanding fields of genetics and molecular biology. http://www.embnet.org/

MAIN ORGANISATION MEMBERS LINKS ... Nodes update Welcome to the EMBnet EMBnet is a science-based group of collaborating nodes throughout Europe and a number of nodes outside Europe. The combined expertise of the nodes allows EMBnet to provide services to the European molecular biology community which encompasses more than can be provided by a single node. Latest News (Apr 2004) 4 new QuickGuides released EMBnet.news issue 10.1 is available Workshop: Regulatory sequence motif discovery in Sweden This site gives an overview of the organisation and of it's members. It provides the visitors with news of the EMBnet community and new links related to bioinformatics. It also combines the services available on the nodes and publishes EMBnet.news, the letter devoted to provide information about what is happening at the national and special nodes. New Links UniProt officially started Dec 15, 2003

173. NCGR Develop bioinformatics and computational biology tools to support genetic analysis and discovery. Features scientific programs, software, and career opportunities. http://www.ncgr.org/

News Stephen Kingsmore joins NCGR as President more Susan Baxter joins NCGR as Chief Operating Officer more NCGR awarded $1.2M by USDA for the continuation of MPI more Events Seminar Series: hot topics, notable guests more Symposium for a National Tuberculosis Archival System more The National Center for Genome Resources (NCGR) in Santa Fe, New Mexico, is an independent, nonprofit research institution that develops and uses informatics for biological discovery. Scientists at NCGR study the influence of genetic variability of both host and pathogen on infectious disease progression and its subsequent impact on human health. Computational biologists, population geneticists, and mathematicians are developing and using novel algorithms and statistical approaches to model complex biological systems. Particular emphasis is placed on meeting the challenges presented in systems biology today, including sparse experimental datasets, poorly defined biological networks, and data collected on disparate timescales. NCGR is a unique provider of professionally engineered software and computational discovery platforms for the scientific community. At its inception in 1994, NCGR's mandate was to develop the Genome Sequence Data Base (GSDB), the first publicly accessible, relational database of human genome sequences from Los Alamos National Laboratory. NCGR has continued to design and maintain publically accessible genomic information resources, such as TAIR and LIS, as well as novel bioinformatic tools, such as Gene-X Lite, ISYS, and XGI, used at research institutions worldwide. Software engineers and developers at NCGR are experienced at creating bioinformatics platforms, incorporating automated annotation and visualization tools, for genome mapping and pathway analysis based on data obtained from high-throughput biotechnologies.

174. O'Reilly Bioinformatics Conference 2003 Alvis Brazma Microarray Informatics Group Leader, European bioinformatics Institute. Lincoln will deliver a keynote on bioinformatics Gone in 2012. http://conferences.oreillynet.com/bio2003/

Home Registration Speakers Keynotes ... Jim Kent Researcher, UC Santa Cruz , 2003 Ben Franklin Award recipient Lincoln Stein Researcher, Cold Spring Harbor Lab Steven Brenner Assistant Professor and leader of a computational genomics research group at the University of California, Berkeley Francis Ouellette Director, University of British Columbia Bioinformatics Centre Alvis Brazma Microarray Informatics Group Leader, European Bioinformatics Institute James Gosling Co-inventor of Java; VP and Fellow, Sun Microsystems Stephen Wolfram Creator of Mathematica , author of A New Kind of Science Damian Conway Research Fellow, Monash University Feel Left Out? If you missed this year's Conference, but want to find out what was covered, download the presentation files Want to view BioCon conference sessions and events in iCal on Mac OS X? Here's how An Interview with Lincoln Stein In this interview, Lincoln Stein talks about the bioinformatics technologies and tools he's most excited about. Lincoln will deliver a keynote on Bioinformatics: Gone in 2012 Stephen Wolfram on Bioinformatics Biocon keynote speaker and A New Kind of Science author Stephen Wolfram chatted recently with Tim O'Reilly about his research, his new book, and its connection to bioinformatics. Don't miss Stephen's keynote on A New Kind of Science and Foundations For Theory in Biology An Interview with Jim Kent Benjamin Franklin Award recipient Jim Kent talks about the future of genomics, modeling biological processes, and open source bioinformatics in this interview on bio.oreilly.com. Kent will accept the annual Bioinformatics.Org award in a plenary session.

175. Bioinformatics And Metabolic Engineering Laboratory At MIT A research group that studies bioinformatics and metabolic engineering. From MIT. http://web.mit.edu/cheme/gnswebpage/index.shtml

Welcome M.I.T . Our research , which is guided by Professor Greg Stephanopoulos of the Chemical Engineering Department , is focused on various issues spanning the fields of both Metabolic Engineering and Bioinformatics. Currently, there are a few open positions in our group. If you are interested in becoming a researcher in our laboratory, please read about the opportunities that are available immediately, or send an e-mail to gnswebpage-www@mit.edu News Address Massachusetts Institute of Technology Department of Chemical Engineering Cambridge, MA 02139 Room 56-469 MIT HOME Last Modified: Monday, May 24th, 2004. gnswebpage-www@mit.edu Telephones

176. Guide To Selected Bioinformatics Internet Resources Refereed. Science and Technology Sources on the Internet. Guide to Selected bioinformatics Internet Resources. Introduction to bioinformatics. http://www.istl.org/istl/02-winter/internet.html

Previous Contents Next Issues in Science and Technology Librarianship Winter 2002 URLs in this document have been updated. Links enclosed in have been changed. If a replacement link was located, the new URL was added and the link is active; if a new site could not be identified, the broken link was removed. Science and Technology Sources on the Internet Guide to Selected Bioinformatics Internet Resources Christy Hightower Engineering Librarian Science and Engineering Library University of California Santa Cruz christyh@cats.ucsc.edu Table of Contents Introduction to Bioinformatics Scope of this Guide Definitions, Glossaries, and Dictionaries News/Keeping Current ... References Introduction to Bioinformatics see also Definitions, Glossaries, and Dictionaries see also Recommended Reading The tremendous interest in bioinformatics, a new discipline at the intersection of molecular biology and computer science, is fueled by the excitement surrounding the sequencing of the human genome and the promise of a new era in which genomic research dramatically improves the human condition. Advances in detection and treatment of disease and the production of genetically engineered foods are among the most often mentioned benefits. Bioinformatics is a fertile new area for programmers. As the eminent computer scientist Donald Knuth is often quoted as saying: "Biology easily has 500 years of exciting problems to work on" ( Doernberg 1993 The National Center for Biotechnology Information ( NCBI 2001 ) defines bioinformatics as:

177. Polish Bioinformatics Site Site of a Polish group working mainly on protein sequence analysis. http://bioinfo.pl

Home Services Links Forum ... * Our papers * Projects: Reflax ELM BioSapiens * Journal Club ... * BioInfoBank BioInfo.PL is the home page of a group of Polish scientists working in the field of Bioinformatics. The site is meant to promote our scientific and academic activity. It contains several useful bioinformatics links and local services focused mainly on the prediction and analysis of the structure and function of proteins or genes. The structure prediction Meta Server offers a gateway to many high quality fold recognition servers and provides and infrastructure and main interface to several highly reliable consensus methods. The Meta Server represents the firs step in the our fold prediction strategy. The Gene Relational DataBase is a system of databases and algorithms aimed at detecting distant evolutionary relationships between proteins. GRDB uses PSI and RPS Blast as well as ORFeus and BASIC, our sensitive profile - profile comparison method, to detect week similarities between protein families. The databases include PDB90, PFAM and other databases (in the future). GRDB can be used for function inference and for selecting distant homologs for structure prediction if a simple Meta Server application gives unreliable results. PDB-Test is a structure validation tool based on the evolutionary approach. It offers the possibility to compare a protein structure with models generated for the corresponding amino acid sequence by fold recognition tools. This can be used to detect tracing shifts in low resolution structures or to put the structure in correct evolutionary context if methods based on structural similarity fail.

178. ElegansNet: The Organism Bio- Cheminformatics And Research Menu Hubsite Provides navigation to information and data on a range of topics including genetics, bioinformatics, aging, and oxidative stress. http://members.tripod.com/C.elegans/

elegans Net elegans Net : The Organism Bio- Cheminformatics and Research Menu Hubsite <META NAME="description" CONTENT=" Comprehensive index of model organisms functional genomics, pharmacogenomics, genome informatics, services, tools, databases, career, tutorials, protocols, meetings... "> "Author" content= "Farhang Payvar" "description" content= "Comprehensive index of model organism informatics, functional genomics, services, tools, databases, career, tutorials, protocols, meetings" "GENERATOR" content= "Microsoft FrontPage 4.0" " keywords" content= "elegans Network, elegansNet, model organisms, worm, nematode, C. elegans, caenorhabditis elegans, mammalian, molecular, biology, biochemistry, genome, structure, databases, announcements, chromosomes, drug, discovery, DNA, vaccine, HTS, microarray, career, funding, human, literature, search, methods, protocols, news, meetings, promoters, proteome, signal transduction, transcription factors, pathway picture, photo, picture, video, cinema, tutorials, steroid hormones, RNAi, consortiums, jobs" This page uses frames, but your browser doesn't support them.

179. MARCOTTE.LAB The Marcotte lab studies the global organization of proteins in the cell using techniques of proteomics and bioinformatics. From the University of Texas. http://polaris.icmb.utexas.edu/

180. Genome Database (GDB) Genome Database (GDB) Established at Johns Hopkins University in Baltimore, Maryland, USA in 1990, the Genome Database (GDB) is the official central repository for genomic mapping data resulting http://rdre1.inktomi.com/click?u=http://www.gdb.org/&y=025961CF017F386F&

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