Newsltr24 Pig genome Update No. 24. May 1, 1997. We in the entire U.S. animal genome community owe Dr. Jenny Hergenrother, College of agric. and Life Sciences maps of chromosomes; and Objective 3 Expand the development and usage of internationally shared species genome databases http://www.genome.iastate.edu/newsletter/nl24.html
Extractions: Pig Genome Update No. 24 May 1, 1997 We in the entire U.S. animal genome community owe Dr. Neal Jorgensen a big debt of thanks! Neal, more than anyone in the Experiment Stations, helped to develop and shape the National Animal Genome Program which led to the NRSP-8. During his tenure as the lead administrative advisor Neal has helped to organize scientists, plan the program, secure funding for all of the collaborative and cooperative efforts and to defend NRSP-8 from those that who have liked to eliminate it. Neal is retiring from the University of Wisconsin this year where he has been a valued faculty member and administrator for the past 29 years. A reception in his honor will be May 28 and as part of the retirement there will be a gift of a book of letters. Please consider sending Neal a letter of thanks for his efforts. The letters should be unfolded and sent to Ms. Jenny Hergenrother, College of Agric. and Life Sciences, 140 Ag Hall, 1450 Linden Drive, Madison, WI 53706 by no later than May 19. Thanks to some great ideas there will be additional resources to share in 1997.
Plant Genome II Abstracts 0404; 2 Biotechnology Center, Huazhong agric. Univ., Wuhan, China TAXA (SST) databases RATED BIOLOGICAL databases TO SUPPORT SUGARCANE, MAIZE AND SORGHUM genome maps. Laurent Grivet http://www.intl-pag.com/2
Extractions: Plant Genome II, January 1994 TRACKING DOWN ANCIENT PLANT TRANSPOSONS: ELUCIDATION OF MOBILE ELEMENT INVOLVEMENT IN GENOME EVOLUTION. Thomas E. Bureau, Shawn E. White and Susan R. Wessler, Department of Botany/Genetics, University of Georgia, Athens, GA 30602 (email: BLTREAUT@BSCR.UGA.EDU). INTEGRATING LIPID METABOLISM INTO THE GENOME Tom Cheesbrough, Biology/Microbiology Dept., South Dakota State University, Brookings, SD 57007 MAPPING ENABLES SERENDIPITY. Edward H. Coe, ARS-USDA and Dept. of Agronomy, Curtis Hall, University of Missouri, Columbia, MO 65211. GENETIC ENGINEERING OF WHEAT. Kutty K. Kartha, Ravindra N. Chibbar and Narender S. Nehra, Plant Biotechnology Institute, National Research Council of Canada, 110 Gymnasium Road, Saskatoon, Saskatchewan, Canada, S7N 0W9. SIMPLE SEQUENCE REPEAT DNA MARKERS FOR GENOME MAPPING AND GENOTYPE IDENTIFICATION. Perry B. Cregan, Mahinur S. Akkaya, Jiang Rongwen, Soybean and Alfalfa Research Lab, USDA, ARS, Beltsville, MD 20705, Arvind A. Bhagwat, Dept. of Agronomy, University of Maryland, College Park, MD 20742; and Uri Lavi, Inst. of Horticulture, ARO, The Volcanic Center, Bet-Dagan, Israel. ARABIDOPSIS WORKSHOP, TUES JAN 25TH 3:30-6:00PM
Extractions: Background Alfalfa ( Medicago sativa ) is a major forage crop. The genetic progress is slow in this legume species because of its autotetraploidy and allogamy. The genetic structure of this species makes the construction of genetic maps difficult. To reach this objective, and to be able to detect QTLs in segregating populations, we used the available codominant microsatellite markers (SSRs), most of them identified in the model legume Medicago truncatula from EST database. A genetic map was constructed with AFLP and SSR markers using specific mapping procedures for autotetraploids. The tetrasomic inheritance was analysed in an alfalfa mapping population.
Agriculture Links - Internet Links livestock animal genome, other organism genome, plant reference The databases canbe browsed or queried. plants in the Botanic Gardens, maps and information for http://www.sl.nsw.gov.au/links/agric.cfm
Extractions: Search guide Agriculture links Australian, International, Horticulture Agriculture - Australian Australian Bureau of Agricultural and Resource Economics (ABARE) ABARE is an independent research agency which provides economic forecasts on Australian rural and resource industries. Subjects covered include commodity forecasts, services and infrastructure in the rural sector and risk management in farm businesses. Australian Agriculture Index (AgNet) This site provides links to agricultural organisations and businesses. Agrigate This site is a gateway for online and offline resources for agricultural research. Information resources are selected by a committee of specialist librarians and members of the agriculture research community. Agrigate is a project of the libraries of the Universities of Melbourne, Adelaide and Queensland and the CSIRO. National Farmers' Federation Australia This site provides links to news and weather, commodity prices and markets, as well as technical and government information.
The NSF Potato Genome Project - Home Goals and Research. Accomplishments. databases and Resources wheat, and potato starches. J agric Food Chem51(8) 2283 for the construction of genome wide transcriptome maps. Plant J31 http://www.potatogenome.org/nsf3/home/additional_references.php
Extractions: Project Goals and Research Accomplishments Databases and Resources ... Links Additional References Home Additional References Back to bibliography Abad MS, Hakimi SM, et al. (1997). Characterization of acquired resistance in lesion-mimic transgenic potato expressing bacterio-opsin. Mol Plant Microbe Interact
Extractions: Genetic mapping and determination of the organization of the wheat genome are changing the wheat-breeding process. New initiatives to analyze the expressed portion of the wheat genome and structural analysis of the genomes of Arabidopsis and rice are increasing our knowledge of the genes that are linked to key agronomically important traits.
Extractions: Clustering is a common methodology for the analysis of array data, and many research laboratories are generating array data with repeated measurements. We evaluated several clustering algorithms that incorporate repeated measurements, and show that algorithms that take advantage of repeated measurements yield more accurate and more stable clusters. In particular, we show that the infinite mixture model-based approach with a built-in error model produces superior results. The two most frequently performed analyses on gene-expression data are the inference of differentially expressed genes and clustering. Clustering is a useful exploratory technique for gene-expression data as it groups similar objects together and allows the biologist to identify potentially meaningful relationships between the objects (either genes or experiments or both). For example, in the work of Eisen
Nucl. Acids. Res. -- Matthews Et Al. 31 (1): 183 records selected from external databases andresults of BLAST searches GrainGenes contains 81 fullgenome maps, accessedunder the Map a review. Aust. J. agric. Res., 52, 10431077. http://nar.oupjournals.org/cgi/content/full/31/1/183
Extractions: Oxford University Press David E. Matthews Victoria L. Carollo Gerard R. Lazo and Olin D. Anderson USDA-ARS, Department of Plant Breeding, Cornell University, Ithaca, NY 14850-1901, USA USDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710-1105, USA *To whom correspondence should be addressed. Tel: +1 607 255 9951; Email: matthews@greengenes.cit.cornell.edu Received August 27, 2002; Revised September 25, 2002. Accepted October 2, 2002 ABSTRACT GrainGenes, http://www.graingenes.org
Science & Technology Division - Agriculture Forestry database program, Dendrome (Forest tree genome database) The Tree Book directory,news, conservation, publications,software, databases, maps and links http://www.vpl.ca/branches/LibrarySquare/tec/agric.html
Extractions: Vancouver-based site that provides information on urban agriculture, including composting and community gardening Commercial Vegetable Production Guides Guides cover variety, climate, soil, seed, transplanting, fertilizing etc for perennial, root, green and other vegetables. Directory of Organics in Canada Gives accesss to a variety of resources including, The National Forestry database program, Dendrome (Forest tree genome database) The Tree Book (detailed information and illustrations about all varieties of trees in B.C.)Forest Practices Code guidebooks and much more Canadian Forest Service: Pacific Forestry Centre
Bajwa Kogan, IPM Informatics And Decision Support day products (calculators, phenology models, maps, and map Ask an Expert http//www1.agric.gov.ab.ca ofthese resources include genome databases for several http://ipmworld.umn.edu/chapters/Bajwa.htm
Genome Research -- Peterson Et Al. 12 (5): 795 sorghum genome is approximately .br/en/)databases maps, and (5) sequencing of clones from Cot librariesmay represent a means by which the diversity of sequences foundin a genome http://www.genome.org/cgi/content/full/12/5/795
Wheat Mapping Projects - North America CORNELL UNIVERSITY LO ITHACA, NEW YORK 14853. CG 9437300-0324 GY 1994 CL PRIMARY CLASSIFICATION GENERAL CLASSIF. CONTACT Plant genome Data and the NRICGP genome mapping databases maps, clones, genome mapping, germplasm and traits. Efforts continue to coordinate the wheat and tree databases http://www.nal.usda.gov/pgdic/Map_proj/wheat.html
GIW 99 Program Registration Dec. 13 1630 - 1830 Garden Room of agric. Interaction Data, Kenichiro Fukuda, Toshihisa Takagi P42 Toward a DataMining Service from Large and Heterogeneous genome databases in genomeNet http://giw.ims.u-tokyo.ac.jp/giw99/Program/program.txt
Genome Biology | Search Results Wolfe_K In Author profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases. ZimmermannW, Butler G, Wolfe KH genome Biol 2003 Wolfe KL, Liu RH J agric Food Chem 2003 http://genomebiology.com/search/results.asp?db=pm&terms=Wolfe_K&field=AU
Extractions: Genetic mapping and determination of the organization of the wheat genome are changing the wheat-breeding process. New initiatives to analyze the expressed portion of the wheat genome and structural analysis of the genomes of Arabidopsis and rice are increasing our knowledge of the genes that are linked to key agronomically important traits.
Rhodes University developing electron density maps; structural superimposition III Gene and genome sequencingstrategies; DNA and protein databases; database searching using http://www.ru.ac.za/academic/calendar2004/biochem.html
Extractions: Introductory Molecular Biology (IMB) is a two-semester subject offered at the second year level to students not majoring in either Biochemistry or Microbiology who require a basic understanding in biochemistry and molecular biology for application in other biological sciences, law, journalism, pharmacy, computer science and education. The subject is comprises of two semester courses offered in Biochemistry and Microbiology, namely IMB 201 (same as BCH 201) and IMB 202 (same as MIC 202). Credit may be obtained in each course separately and, in addition, an aggregate mark of at least 50% will be deemed to be equivalent to a two-credit course IMB 2, provided that a candidate obtains the required subminimum (40%) in each component. No supplementary examinations will be offered for either course. Practical reports, essays and class tests collectively comprise the class mark, which forms part of the final mark.
Rice Genome Newsletter (Volume 3, Issue 1, July 1994) for studying metabolic pathways and expression maps was presented model plant forall cereal genome mapping and Bigwood on integration of databases, ACeDB and http://rgp.dna.affrc.go.jp/rgp/ricegenomenewslet/nl5.html
Extractions: Rice Genome Research Program (RGP) Inside front cover: Announcement This is the fifth issue of the newsletter for the Rice Genome Research Program in NIAR/STAFF. The next issue will be published in December 1994. Editorial members Editor-in-chief: T. Sasaki Editors: N. Kurata, A. Miyao, Y. Nagamura, M. Yano Assistant Editors: I. Ashikawa, Y. Harushima, Y. Katayose, J. Song, Y. Umehara Technical editing and English: I. Havukkala Advisor: K. Kobayashi All correspondence should be addressed to: Editorial Office of Rice Genome Rice Genome Research Program 446-1, Ippaizuka Kamiyokoba Tsukuba Ibaraki 305 Japan Fax: +81-298-38-2245 or +81-298-38-2302 email: ilkka@staff.or.jp Cover page: Colony hybridization image of YAC high density filters using DNA marker R845 located on chromosome 6. Five filters containing about 7000 clones were used for YAC screening. The signals were detected with the ECL system. Rice Genome Research Program (RGP) is a part of the Genome Research Program of the Ministry of Agriculture, Forestry and Fisheries of Japan (MAFF).
Molecular Markers In Plant Genome Analysis of information and a number of databases are being have proven utility in constructionof linkage maps among species SM and Kresovich, S., in genome Mapping in http://www.ias.ac.in/currsci/jul25/articles15.htm
Extractions: Molecular markers in plant genome analysis Swati P. Joshi, Prabhakar K. Ranjekar and Vidya S. Gupta* Plant Molecular Biology Group, Division of Biochemical Sciences, National Chemical Laboratory, Pune 411 008, India P LANTS have always been looked upon as a key source of energy for survival and evolution of the animal kingdom, thus forming a base for every ecological pyramid. Over the last few decades plant genomics has been studied extensively bringing about a revolution in this area. Molecular markers, useful for plant genome analysis, have now become an important tool in this revolution. In this article we attempt to review most of the available DNA markers that can be routinely employed in various aspects of plant genome analysis such as taxonomy, phylogeny, ecology, genetics and plant breeding. During the early period of research, classical strategies including comparative anatomy, physiology and embryology were employed in genetic analysis to determine inter- and intra-species variability. In the past
Linkseite genome Database; Interactive Forest maps (weltweit);Mistletoe Center (Datenbank Virus databases on-line; Virtual Library - Bio http://bfw.ac.at/040/1480.html
Extractions: Erstellen und versenden von Bookmarks Forstliche Links: Die Forstwirtschaft im Internet (Daryoush Voshmgir, BFW) Liebe Benutzerinnen und Benutzer! Danke! Forst- und Agrarportale Forstliche Verzeichnisse und Kataloge About.com Agrarseiten AgriSurf AgView.com ... ForstNet des BMLFWU mit verschiedenen Themenplattformen ForestNet.de
Genomics Posters 2003 to act as anchors to integrate maps constructed from and for locating genes of interestin the genome. SSR enriched library and searching databases were useful http://www.fgsc.net/asil2003/GenomicsPosterAbstracts2003.htm
Extractions: 239. The Ashbya gossypii genome: lessons learned by comparison to the Saccharomyces cerevisiae genome. S. Brachat , F. S. Dietrich , S. Voegeli1, A. Lerch , T. Gaffney and P. Philippsen Syngenta, Research Triangle Park, NC, USA. Current Address: Department of Molecular Genetics and Microbiology, Duke University Medical Centre, Durham, NC, USA. We completed the sequencing of the 9Mb genome the filamentous fungus Ashbya gossypii which encodes 4720 protein coding genes, 190 tRNA genes, 50 small RNA genes and 40-50 copies of the rRNA genes. With respect to the size and the number of genes, this represents presently the smallest genome of a free living eukaryot. Surprisingly, the protein coding genes revealed striking similarities to that of S. cerevisiae with over 95% of the A. gossypii genes sharing significant homology to S. cerevisiae genes. In addition, 90% of A. gossypii genes show both, homology and synteny, with the genome of the baker's yeast. The synteny can be described as "relaxed synteny" since the gene order in any A. gossypii
